| Author | Faculty / Appointment Dates | Vols. | Tradition | Reference |
| Wolfgang Mayer | Prof. of (1611-?) | 7 | Reformed | n/a |
| Johann Jacob Grasser | n/a | 4 | Reformed | n/a |
| Faculty of Arts |
| Heinrich Pantaleon | Prof. of Arts (1545-1548) | 24 | Reformed | ro | HLS |
| Sebastian Lepusculus | Prof. of Hebrew (1556-†1576) | 4 | Reformed | n/a |
| Israel Ritter | Prof. of Hebrew (1586-†1588) | 0 | Reformed | n/a |
| Faculty of History |
| Jakob Christoph Iselin | Prof. of History (1711-?) | 18 | Reformed | n/a |
| Faculty of Law |
| Simon Battier | Prof. of Law (1677-†1681) | 7 | Reformed | HLS | Leu |
| Faculty of Medicine |
| Heinrich Pantaleon | Prof. of Medicine (1558-?) | 24 | Reformed | ro | HLS |
| Theodor Zwinger, Sr | Prof. of Medicine (1559-†1588) | 25 | Reformed | en de | Jöcher | Leu |
| Nicolaus Taurellus | Prof. of Medicine (1578-1580) | 72 | n/a | n/a |
| Georg Löw | Prof. of Medicine (1595-†1610) | 12 | Reformed | HLS |
| Faculty of New Testament |
| Johann Grynäus | Prof. of New Testament (1740-†1744) | 1 | Reformed | n/a |
| Faculty of Philosophy |
| Simon Grynäus, Sr | Prof. of Greek (1529-1532) | 14 | Reformed | en de | NDB | Scholasticon |
| Martin Borrhaus | Prof. of Philosophy (1541-1544) | 25 | Lutheran, Reformed | en de | NDB | VGT |
| Conrad Lycosthenes | Prof. of Logic (1542-1545) | 8 | n/a | en de | VGT |
| Johannes Hospinianus | Prof. of Logic (1546-†1575) | 12 | Reformed | n/a |
| Thomas Grynäus | Prof. of Latin & Greek (1548-1553) | 0 | Reformed | en de | HLS | VGT |
| Heinrich Pantaleon | Prof. of Logic (1556-1557) | 24 | Reformed | ro | HLS |
| Heinrich Pantaleon | Prof. of Physics (1557-1558) | 24 | Reformed | ro | HLS |
| Thomas Erastus | Prof. of Ethics (1581-†1583) | 87 | Reformed | n/a |
| Ludwig Lucius | Prof. of Logic (1611-?) | 100 | Reformed | ADB | HLS |
| Johann Rudolf Wettstein, Sr | Prof. of Greek (1637-1643) | 10 | Reformed | ADB | Leu |
| Johann Rudolf Wettstein, Sr | Prof. of Philosophy (1643-1654) | 10 | Reformed | ADB | Leu |
| Johann Zwinger | Prof. of Greek (1656-1664) | 43 | Reformed | ADB | Leu |
| Heinrich Kisselbach | Prof. of Physics (1657-†1673) | 5 | Reformed | HLS |
| Johann Jakob Hofmann | Prof. of Greek (1667-1683) | 23 | Reformed | HLS |
| Simon Battier | Prof. of Ethics (1668-1677) | 7 | Reformed | HLS | Leu |
| Johann Jakob Hofmann | Prof. of History (1683-†1706) | 23 | Reformed | HLS |
| Samuel Battier | Prof. of Greek (1704-†1744) | 4 | Reformed | HLS | Leu |
| Jakob Christoph Beck | Prof. of History (1737-1744) | 8 | Reformed | ADB | HLS |
| Johann Rudolf Wettstein, Jr | Prof. of Rhetoric (?-?) | 35 | Reformed | Leu |
| Faculty of Rhetoric |
| Celio Secondo Curione | Prof. of Rhetoric (1546-†1569) | 26 | Reformed, Socinian-Unitarian | n/a |
| Faculty of Theology |
| Johannes Oecolampadius | Prof. of Theology (1523-†1531) | 229 | Reformed | en de | GAMEO | NDB | VGT |
| Sebastian Münster | Prof. of Hebrew (1529-†1552) | 101 | Reformed | en |
| Paulus Constantinus Phrygio | Prof. of Old Testament (1529-1535) | 6 | n/a | VGT |
| Simon Grynäus, Sr | Prof. of New Testament (1532-†1541) | 14 | Reformed | en de | NDB | Scholasticon |
| Oswald Myconius | Prof. of New Testament (1532-1541) | 20 | Reformed | en de | NDB | VGT |
| Andreas Karlstadt | Prof. of Old Testament (1535-†1541) | 160 | Lutheran | en de | HLS | NDB | VGT |
| Wolfgang Wissenburg | Prof. of New Testament (1541-1554) | 2 | Reformed | ADB |
| Martin Borrhaus | Prof. of Old Testament (1544-†1564) | 25 | Lutheran, Reformed | en de | NDB | VGT |
| Simon Sulzer | Prof. of New Testament (1554-1564) | 16 | Lutheran, Reformed | en | ADB | VGT |
| Ulrich Koch | Prof. of New Testament (1564-†1585) | 10 | Reformed | n/a |
| Simon Sulzer | Prof. of Old Testament (1564-1575) | 16 | Lutheran, Reformed | en | ADB | VGT |
| Johann Jakob Grynaeus | Prof. of Old Testament (1575-1584) | 356 | Reformed | en de | HLS | NDB | VGT |
| Simon Sulzer | Prof. of Hebrew (1575-1581) | 16 | Lutheran, Reformed | en | ADB | VGT |
| Johannes Brandmüller | Prof. of Hebrew (1581-1586) | 11 | Reformed | n/a |
| Christian Wursteisen | Prof. of Old Testament (1585-1586) | 10 | Reformed | n/a |
| Johannes Brandmüller | Prof. of Old Testament (1586-†1596) | 11 | Reformed | n/a |
| Johann Jakob Grynaeus | Prof. of New Testament (1586-†1617) | 356 | Reformed | en de | HLS | NDB | VGT |
| Johann Buxtorf, Sr | Prof. of Hebrew (1590-†1629) | 76 | Reformed | en de | EMLO | HLS | Leu | NDB |
| Amandus Polanus von Polansdorf | Prof. of Old Testament (1596-†1610) | 237 | Reformed | en cs | ADB | VGT |
| Sebastian Beck | Prof. of Old Testament (1610-1618) | 70 | Reformed | ADB | HLS | Leu |
| Sebastian Beck | Prof. of New Testament (1618-†1654) | 70 | Reformed | ADB | HLS | Leu |
| Johannes Wollebius | Prof. of Old Testament (1618-†1629) | 65 | Reformed | en | ADB | Leu |
| Johann Buxtorf, Jr | Prof. of Hebrew (1629-†1664) | 147 | Reformed | en de | EMLO | HLS | Leu | NDB |
| Theodor Zwinger, Jr | Prof. of Old Testament (1630-†1654) | 22 | Reformed | de fr | ADB | EMLO | Jöcher | Leu |
| Johann Buxtorf, Jr | Prof. of Theology (1647-1654) | 147 | Reformed | en de | EMLO | HLS | Leu | NDB |
| Johann Buxtorf, Jr | Prof. of Old Testament (1654-†1664) | 147 | Reformed | en de | EMLO | HLS | Leu | NDB |
| Johann Rudolf Wettstein, Sr | Prof. of New Testament (1654-†1684) | 10 | Reformed | ADB | Leu |
| Lucas Gernler | Prof. of Theology (1656-?) | 24 | Reformed | ADB | HLS |
| Johann Zwinger | Prof. of Polemical & Systematic Theology (1664-1675) | 43 | Reformed | ADB | Leu |
| Peter Werenfels | Prof. of Theology (1675-1685) | 60 | Reformed | ADB | Leu |
| Johann Zwinger | Prof. of New Testament (1675-†1696) | 43 | Reformed | ADB | Leu |
| Peter Werenfels | Prof. of Old Testament (1685-1696) | 60 | Reformed | ADB | Leu |
| Johann Rudolf Wettstein, Jr | Prof. of Theology (1685-1696) | 35 | Reformed | Leu |
| Peter Werenfels | Prof. of New Testament (1696-†1703) | 60 | Reformed | ADB | Leu |
| Samuel Werenfels | Prof. of Theology (1696-†1740) | 111 | Reformed | en de | ADB | Leu |
| Johann Buxtorf | Prof. of Hebrew (1704-?) | 2 | Reformed | Leu |
| Hieronymus Burckhardt | Prof. of Theology (1710-†1737) | 6 | Reformed | HLS | Leu |
| Johann Ludwig Frey | Prof. of Theology (1711-1737) | 9 | Reformed | ADB | HLS |
| Johann Ludwig Frey | Prof. of Old Testament (1737-†1759) | 9 | Reformed | ADB | HLS |
| Johann Grynäus | Prof. of Theology (1738-1740) | 1 | Reformed | n/a |
| Johann Balthasar Burckhard | Prof. of Theology (1740-?) | 4 | Reformed | Leu |
| Jakob Christoph Beck | Prof. of Dogmatic & Controversial Theology (1744-1759) | 8 | Reformed | ADB | HLS |
| Jakob Christoph Beck | Prof. of Old Testament (1759-†1785) | 8 | Reformed | ADB | HLS |